PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911331.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 384aa    MW: 42162.6 Da    PI: 8.5651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911331.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-0678101327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +f+r G+C  G+rC+F Hgp
  XP_010911331.1  78 RVPCYYFQR-GHCLKGERCPFTHGP 101
                     89*******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.108111IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.8171339IPR000571Zinc finger, CCCH-type
SMARTSM003561.21538IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-675100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7775102IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-576101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-480101IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
GNECEYRHCD GARANPRDCW YWLNGNCLNL KCLFRHAPLD GLFGTQGPSS GPVQPPSRAV  60
ATTKIPAGHA PSTMNKERVP CYYFQRGHCL KGERCPFTHG PQASGNPVSQ QVAKVTTIIP  120
EPALQHFQGN QRQIPQGSSR STRLQGRITL PGRSLPDIPN DLPSENHGNR GRPRGRPSPL  180
RPRNYQGRHH ERVRQRSNEE FAADARSSGR KRTRRDDTSP PDFAGPKSLA ELKGAKVMEN  240
SQDLSTKSIS AATPLQLNNM KTAKGAELRY PKDSLSFEGP KSLSVILKRK REVASANDAS  300
SGDENDRRDG ENAADGSVLV ALSDVHQSIL PVETKKDGHD DASSLEENKD RTTKEKEEGG  360
LNHGEEGSIY DGRSSAEEDM FDAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911331.10.0PREDICTED: zinc finger CCCH domain-containing protein 19-like, partial
TrEMBLM0S0177e-46M0S017_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P15090_0012e-45(Musa acuminata)